Table 2 Nodes and edges statistics from minigraph
From: Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
Graph parameters | Count | Length, bp |
|---|---|---|
All nodes | 153,597 | 2,728,215,813 |
Reference nodes | 111,178 | 2,709,654,022 |
Non-reference nodes | 42,419 | 18,561,791 |
Added from Kankrej | 16,174 | 7,369,711 |
Added from Gir | 9,306 | 3,711,106 |
Added from Sahiwal | 7,286 | 3,124,476 |
Added from Red Sindhi | 5,536 | 2,629,123 |
Added from Tharparkar | 4,117 | 1,727,375 |
Total Edges | 218,354 | - |
Edge Ref-Ref | 133,985 | - |
Edge Ref-Nonref | 83,089 | - |
Edge Nonref-Nonref | 1,280 | - |